Wednesday 12 October 2016

LAB 1: PRINCIPLES AND USE OF MICROSCOPE

1.1 Setting up and using the microscope

Introduction
Microorganisms or microbes are microscopic living organisms, which mean they are less likely to be visible to the naked eye. In order to be seen, microorganisms need to be magnified. Thus, microscope is used to observe and study microorganisms. Although microscopes come with various type of models and applications (such as electron microscope), the most basic microscope with simple way of handling will be the light microscope. Despite their disadvantages comparing to other high-end microscope, they are still capable of viewing microorganism. This instrument is commonly used by beginners such as student.
The part of light microscope

The following description is generalized to cover a typical microscope (see figure 1.1)



The light microscope uses light to illuminate specimens and glass lenses to magnify image. Hence, the illuminating process requires a strong source of white light which is generated by the light bulb installed in the base of the microscope. The on-off switch turns on the current to the bulb; the voltage control dial controls the brightness of the bulb. When the light bulb is turned on, it produces white light which will travel through the condenser before hitting the specimen. The position of the condenser stage can be adjusted using the condenser focusing knob to ensure that the light is well-condensed and highly focused before it exits the condenser to give the best illumination of the specimen. Condenser is used to collect and focus the light from the illuminator on to the specimen.
Diaphragm controls the amount of light reaching the specimen. It is located above the condenser and below the stage. The diaphragm and condenser together control both the focus and quantity of light applied to the specimen.
A flat platform that supports the slide being analysed is called stage. The stage can be adjusted forwards and backwards and from left to right by using the coaxial knobs which able the viewer to centre the slide preparation in the light path. Stage clips are used when there is no mechanical stage. The viewer is required to move the slide manually to view different sections of the specimen.
Coarse adjustment knob is a knob present on the arm of a microscope. The main function of this knob is to move the specimen back or forth to adjust the slide containing specimen in order to bring it to focus and show the best image possible. The coarse adjustment should be carefully moved and adjusted to attain desired results. Fine adjustment knob is a sub part of the coarse adjustment knob. It is used to bring the specimen into sharp focus.
The objective lens is the part of microscope responsible for magnifying the image of specimen. There are four objective lenses with magnification of 4X, 10X, 40X and 100X. Nosepiece houses the objectives. By rotating the revolving nosepiece, viewer should be able to change the objectives to the one with desired magnification power into the light path to increase or decrease the magnification.
Lastly, the eyepiece tube receives the light that passes through the objective lens then redirects it to the eyepiece lens. The eyepiece has a magnifying power of 10x by its own, thus further magnifying the image from the objectives, producing the final image will be seen by the viewer of the microscope. 

Magnification and resolution
Magnification is simply the number of times an image's size is enlarged where size is measured in the degrees of an angle formed by lines running from either end of the image to the vertex at the viewer's eyes. By multiplying the power of the objective lens with the power of the eyepiece lens, the total magnification of the image seen can be calculated. Hence, there are four different magnifications:
4x objective X 10x eyepiece = 40x magnification
10x objective X 10x eyepiece = 100x magnification
40x objective X 10x eyepiece = 400x magnification
100x objective X 10x eyepiece = 1000x magnification
The resolving power of a microscope determines the degree of detail that is visible. Resolution is expressed as the minimum distance that can be resolved. In other words, resolution is the ability to distinguish two separate points as being separate and distinct. One of the factors that affect resolution is by adjusting the condenser diaphragm. By closing the diaphragm, contrast of image is increased but the resolution is decreased whereas by opening the diaphragm, contrast is decreased but resolution is increased.
            Therefore, both magnification and resolution are equally essential. The image can be magnified through magnification. However, a blurred image will be seen unless the resolution is excellent. On the contrary, an excellent resolution can be obtained, but no detail will be seen through the microscope without having good magnification.

Objective
1) To learn to use a simple bright-field microscope correctly.

Material and reagents
Microscope slide and cover-slip

Procedure
A) Preparation:
1. Sat on the stool with  knees under the bench and the microscope is moved so that both eyepieces were looked through without straining to ensure own comfortability.
2. After the power lead of the microscope is plugged in and the power is turned on, the microscope light is turned on using the main on-off switch.
3. The light intensity is adjusted using the brightness control. The normal adequate position is 5.
4. The revolving nosepiece is rotated to bring the 4x objective lens into the light path.
5. A clean slide is being taken and a line is marked on the slide using a marker pen. The slide is placed on the stage and it is secured by using the spring clip. Then, the slide is moved into the light path using the coaxial stage control knobs.
6. Both eyepieces were being looked through and were adjusted until a single circle of light is seen. A note is made in the  class manual of the setting on the interpupillary distance scale for future reference.
7. The tube length adjustment (diopter) ring on the right eyepiece is rotated to match the interpupillary distance setting obtained in 1.6.
8. The marker pen mark is focused by adjusting the coarse and fine adjustment knobs. This is done by using one's right eye only.
9. The left eyepiece is focused using the tube lens adjustment (diopter) ring. This time is done using left eye only. A note is again made in class manual of the diopter ring setting for future reference. A perfect binocular vision should be achieved by now.

B) Low power (10x) objective viewing:
1. A marker pen marked slide is replaced with a specimen slide.
2. A view of the specimen is obtained by focusing using fine adjustment knob and by moving the stage. The power is changed to 10x objective by watching from the side of the microscope.
3. By placing an object, such as an inoculating loop or pencil tip in the centre of the glass above the light source, the condenser is focused. Then, the condenser light is adjusted so that the object is in focus.
4. In order to throw the object out of focus, the condenser is being lowered just sufficiently.
5. To optimize image definition and contrast, one eyepiece is removed, looked down the empty tube and the condenser diaphragm is adjusted so that its edge can just be seen inside the circle of light. A better image may be obtained by reducing the aperture further for specimen of poor contrast. The eyepiece is replaced and re-focused with fine adjustment.

C) High power (40x) objective viewing:
1. The specimen is focused with the 10x objective. The power is changed to 40x objective by watching from the side of my microscope.
2. The condenser is raised to within 1 cm of the slide.
3. The specimen is focused using fine focus and light intensity is increased using the brightness control if necessary.
4. The condenser diaphragm is adjusted for optimum contrast as above.

D) Oil immersion (100x) objective viewing:
1. The specimen is focused with the 40x objective. The 100x objective is carefully selected by watching from the side of your microscope. The objective is not allowed to touch the slide.
2. The objective is carefully turned to one side of the light path then one or two drops of oil is placed onto the slide. The objective is rotated so that I is again in the light path.
3. The condenser is raised as close as possible to the slide.
4. The specimen is focused using fine control and the light intensity is increased using the brightness control if necessary.
5. The condenser diaphragm is adjusted for optimum contrast as above.

E) After use:
1. The specimen slide is removed and discarded into the appropriate discard container.
2. The light brightness control is reset to its lowest setting.
3. The lowest power objective is reset to the working position.
4. The oil from the 100x objective is cleaned using lens tissue.
5. The microscope light at the on-off switch and the power at the power point are turned off. The cord is disconnected and it is wrapped carefully around the base of the microscope.
6. The cover is replaced.

F) Care of the microscope:
1. A microscope must be carried carefully, holding it firmly by arm and supporting it at the base. The instrument is kept upright.
2. The microscope should never be placed close to the edge of the bench.
3. Do not tamper with or remove any parts. Ask for help if the microscope does not seem to be functioning properly.
4. The lenses are not to be handled with our fingers. Specified lens tissues are used only for cleaning lenses.
5. Liquids, particularly acid and alcohol, are not allowed to come into contact with any part of the microscope.
6. A cover slip is always used when examining objects or organisms mounted in water or other fluids.
7. The stage is always being lowered before placing or removing a slide.
8.  Before putting the microscope away, the lowest power objective is always being put in working position and the cover is replaced.

Results
Specimen observed: Shigella dysenteriae

100x magnification
400x magnification
1000x magnification
Discussion
1. Microscope is positioned so that we can observe specimen through the eyepieces
   comfortably.
2. Specimen is observed start from lowest power objective (10 x), followed by high 
   power (40 x) and oil immersion objective (100 x) to obtain a clearer and
   magnified image.
3. When we observe the specimen:
a. the light intensity is controlled using illumination intensity knob to allow correct 
  amount of light enter microscope.
b. The iris diaphragm is adjusted to obtain higher resolution of the image.
c. The coarse-focus adjustment knob is used, followed by fine-focus adjustment knob to
   ensure image clear and more focused.
4. The specimen that we observed is Shigella dysenteriae.
a. Shape: rod
b. Size: tiny
c. Surface: shiny and smooth
d. Color: Red-stained

Conclusion
Light microscope is an instrument to observe microorganism which we cannot see with our naked eyes. Each part of microscope has its own functions and they can be adjusted to obtain best view of image onto specimen. The higher the magnification, the clearer and the bigger the image.

1.2 Examination of cells
Introduction
In order to examine the extremely minute microorganisms’ cells more precisely, we need to study the cells using oil immersion objective after staining. The staining of cells can distort of even destroy the cells.
There is another method called wet mount method which enables us to examine the microorganisms’ cells in their natural state in a quick and easy way without using special equipment. Throughout this method, we can observe the shapes and sizes of living microorganisms and even determine the motility of the cells.
           
Objective
- To provide an experience in the use of microscope.
- To learn the proper technique of using wet mount method.
- To illustrate the diversity of cells and microorganisms.

Materials and reagents
Culture
Immersion oil
Lens tissue
A microscope slide containing stained microorganisms
Inoculating loop
Bunsen burner
Slide and coverslip

Procedure
A) Stained cells:
1. Microscope is set up as described above and the slide is examined under the oil immersion lens.
2. The shape and size of the organisms and any structure that are visible are observed. The observation is drawn out.

B) The wet mount:
1. A sterile Pasteur pipette is used to aseptically transfer one drop of culture to the centre of a glass slide.
2. A marker pen is used to mark a coverslip so that it can help to focus on the microorganisms.
3. The coverslip is turned downwards so that the marker pen mark faced down. Then one edge of the coverslip is placed onto the slide and it is lowered gently so that the drop of culture is being covered. The culture will spread between the coverslip and the slide.
4. The slide is placed on the microscope stage and 4x objective is used to focus on the culture. Two or three groups of highly motile Escherichia coli.
5. The cell is observed using the 10x and the 40x objectives. Some smaller moving objects may be detected by a closed observation. They will be some of the larger types of bacteria. Whatever is being seen is drawn out.
6. The cells are observed using oil immersion lens. The condenser and diaphragm are adjusted. Drawings are made and comment is given on anything of interest observed.
7. This procedure is repeated with other culture.

Results
Bacteria observed: Cocci, Bacilli, Spirilli
1000x magnification

Specimen Observed: Escherichia coli

 
1000x magnification

Discussion
1. Light will refract in different ways under 100 x objective lens, causing the image to 
   look unfocused. However, oil have similar refractive index as glass, so most of the
   light can be refracted through the oil into objective lens. This increases the resolution
   of the image due to greater light-gathering ability and reduces light scattering as light
   passes from the specimen to the objective lens.

2. Two microorganism are observed using oil immersion technique:
a. Cocci, bacilli, spirilli:
Shape: spherical (cocci), rod (bacilli), spiral (spirilli)
Size: tiny
Surface: smooth
Color: Red-stained

b. Escherichia coli
Shape: rod
Size: tiny
Surface: smooth
Color: red

Conclusion
By using oil immersion technique which has magnification of 1000 x, we can clearly view and observe the morphology of living microorganisms while still preserving good resolution.

References
http://botit.botany.wisc.edu/botany_130/microscope/Resolution.html

No comments:

Post a Comment