Monday 17 October 2016

LAB 2 : MEASUREMENT AND COUNTING OF CELLS USING MICROSCOPE

2.1 Ocular Micrometer
Introduction

Ocular micrometer is a glass disc with etched equally spaced divisions on surface that fits in a microscope eyepiece. It is used to measure and compare the size of prokaryotic and eukaryotic microorganisms. The ruled scale is not calibrated. When placed in the eyepiece, the line superimposed certain distance markers on the microscope field. The actual distance superimposed may be calibrated using a stage micrometer on which parallel lines exactly 0.01mm (10μm) apart etched. By determining how many units of the ocular micrometer superimpose a known distance on the stage micrometer, you can calculate the exact distance each ocular division measures on the microscopic field. Calibrating an ocular micrometer is only reliable for one objective on one scope. Changing objective lens may yield varying results, hence when you change objectives you must recalibrate the system. After the calibration of ocular micrometer, the stage micrometer is replaced with a slide containing microorganisms. The dimensions of the cells may be determined.

                                                 
                                              Image result for ocular micrometer 
                                                      
                                                             An Ocular Micrometer

                                               Image result for Ruled scale of an Ocular Micrometer

                                               Ruled scale of an Ocular Micrometer


                                             Image result for Stage Micrometer

                                                               Stage Micrometer


                                

                           Calibration of an ocular micrometer with a stage micrometer


Objective
To measure and count cells using a microscope

Materials and Reagents
Light microscope
Ocular micrometer
Stage micrometer
Stained preparation of yeast 

Procedure

1. The stage micrometer is placed on the stage of the microscope.

2. The microscope is focused using lowest power objective until the image on the stage micrometer is observed superimposed on the eyepiece scale.

3. The number of divisions of the eyepiece scale correspond top definite number of divisions on the stage scale is determined.

4. The measurement of an eyepiece division in micrometer (µm) is calculated.

5. The procedure is repeated using high-power and oil immersion objective.

6. One example is shown below:
Each division of the stage micrometer = 10µm.
If 100 eyepiece divisions = 11 stage divisions = 110µm, then:
1 eyepiece division =110/100 = 1.1µm

7. For future reference, the diameter of the field is calculated and recorded for each objective.

8. The average dimensions (in µm) of a sample of yeast cells is determined, followed by a sample of bacterial cells. At least 10 observations should be included in the samples.

Result

The dimension of the yeast cell

For magnification of 10x eyepiece X 40x objective lens = 400x magnification,
Stage scale = 0.01 mm
4 ocular unit= 0.01mm
1 ocular unit= 0.0025mm
                   = 2.5µm

Sample yeast
Ocular reading (unit)
Stage measurement (µm)
1
1.5
1.5x2.5=3.75
2
1.0
1.0x2.5=2.5
3
1.0
1.0x2.5=2.5
4
1.3
1.3x2.5=3.25
5
1.9
1.9x2.5=4.75
6
1.5
1.5x2.5=3.75
7
2.9
2.9x2.5=7.25
8
2.0
2.0x2.5=5.0
9
2.6
2.6x2.5=6.5
10
1.6
1.6x2.5=4.0


The average dimensions of yeast cell = (The total stage measurement) / (The total number of yeast) sample)
                                                            = (3.75+2.5+2.5+3.25+4.75+3.75+7.25+5.0+6.5+4.0) / 10
                                                           
                                                            = 4.325 µm

Therefore, average dimension of sample yeast cell is 4.325 µm.

Discussion

To measure the size of the cell, an ocular micrometer is required. Ocular micrometer is a glass disk that fits in a microscope eyepiece and that has a ruled scale. When ocular micrometer is calibrated with a stage micrometer, direct measurements or the correct scale of a cell can be obtain. Stage micrometer is simply a microscope slide with a finely divided scale marked on the surface. Before measure the dimension of the cell, the stage has to be moved or adjusted until the line of ocular micrometer is superimposed to stage micrometer. When the lines of micrometer are coincided, then only the dimension of the cell can be measured. Besides, the appearance of image in ocular micrometer will not change with the change of magnification but scale on stage micrometer will change with the change in of magnification. In this experiment, with 400x magnification, one stage scale with 0.01mm is equal to 4 ocular units which mean one ocular unit equal to 0.0025mm or 2.5µm. Therefore, average dimension of sample yeast is 4.325 µm.

Conclusion

With the use of ocular micrometer together with the stage micrometer, the specific size or dimension of microorganism, yeast cell can be measured easily.


2.2 Neubauer Chamber
Introduction
Neubauer chamber is the most common method used to count microbes that are in suspension . It is a heavy glass slide with two counting areas which have specific depth. The counting areas are separated by a H-shaped trough . A special coverslip is placed over the counting areas and sits a precise distance above them. 


     

   Neubauer Chamber



Counting Grid


Materials and Reagents
Serial dilutions of yeast culture
Neubauer and coverslip
70% ethanol
Sterile Pasteur pipettes

Procedure

1. A drop of diluted yeast culture is added using a sterile Pasteur pipette to the space between the coverslip and the counting chamber.

2. The cells are allowed to settle for about one minute.

3. The cells in the four corner and middle squares are counted and there should be more than 30 cells per area for a reliable result.

4. The Neubauer chamber and the coverslip are cleaned by using 70% ethanol.

Counting

1. The middle large square with size of 1 mm x 1 mm and depth of 0.1 mm is observed for calculation purposes.

2. There are 25 smaller squares, each with size of 0.2 mm x 0.2 mm, inside the middle large square.

3. 10 out of 25 smaller squares are randomly chosen to calculate the number of yeast cells in each of the squares.

4. The average number of cells per square is then calculated.

5. The cell concentration is calculate using the formula 


Average number of cells per square box/ Volume of square in mL

Results:
Grid lines of Neubauer Chamber



 Number of cells to be counted per square box


Average number of the cells per square box = (25 +  28 + 31 + 25 + 33 + 26 + 34 + 29 + 37 + 22) / 10

                                                                       = 29 cells

Volume of the square: 0.25 mm x 0.25 mm x 0.1 mm = 0.00625 mm^3

                                                                                  = (0.00625 mm^3) / 1000  
                                                                                      
                                                                                  = 0.00000625 cm^3
                                                                                 
                                                                                  = 0.00000625mL

29 cells in 0.00000625 mL,

Cell concentration = (29 cells) / (0.00000625 mL)

                               = 4640000 cells/mL

Discussions:
           
A Neubauer Chamber is used to determine the concentration of cells by counting the number of cells per unit volume of a suspension. A special coverslip called haemocytometer is placed over the counting areas and sits a precise distance above them. This haemocytometer contains of a thick glass microscope slide with a rectangular indentation that creates a chamber. This chamber is engraved with a laser-etched grid of perpendicular lines. The device is carefully crafted so that the area bounded by the lines is known, and the depth of the chamber is also known. Therefore, the number of cells or particles in a specific volume of fluid is possible to be obtained, and thereby calculate the concentration of cells in the fluid overall. Next, the ruled area of the hemocytometer consists of several, large, 1 x 1 mm (1 mm2) squares which are subdivided in 3 ways; 0.25 x 0.25 mm (0.0625 mm2), 0.25 x 0.20 mm (0.05 mm2) and 0.20 x 0.20 mm (0.04 mm2). The central, 0.20 x 0.20 mm marked, 1 x 1 mm square is further subdivided into 0.05 x 0.05 mm (0.0025 mm2) squares. The raised edges of the hemocytometer hold the coverslip 0.1 mm off the marked grid. This gives each square a defined volume. The cell-sized structures counted lie between the middle of the three lines on the top and right of the square and the inner of the three lines on the bottom and left of the square.

There are some precautions that need to be taken while determining the cell concentration. First, always repeat the procedures to obtain average value. Avoid improper filling of chambers which is too much or too little. We need to ensure representative sample taken is counted with pipette and no air bubbles are trapped. There are different types of counting chambers available with different grid sizes, so we have to know the grid height and  size  otherwise  we will make calculation errors. Next, while counting the number of cells, cells that touch the top and right lines of a square should not be counted and cells on the bottom and left side should be counted. Besides, we need to immobilize the moving cells first before counting. Lastly, the objective of Neubauer Chamber is much thicker than a regular slide, so try to avoid crashing of the objective into the chamber when focusing.

Conclusion

Neubauer Chamber is used to count microbes and hence determine the cell concentration. Based on the result obtained, the yeast concentration is 4640000 cells/mL.

Reference:

1 comment:

  1. There is a mistake in the calculations of the volume for heamacytometer and therefore the cell concentration is inaccurate

    ReplyDelete